SNP Profiles of ICS 40 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
1._ICS_40	GG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
2._RUQ_1432	CG	CT	_	_	GT	_	_	_	_	CT	AA	_	_	_
3._ICS_40	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
4._GC-01-106-6-03	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
5._GC-01-106-6-03	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
6._GC-01-106-6-03	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
7._GC-01-106-6-03	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
8._GC-01-106-6-03	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
9._ICS_40	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
10._ICS_40	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
11._ICS_40	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
12._ICS_40	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
13._RUQ_1432	CG	CT	CT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
14._GC-01-106-6-03	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
15._GC-01-106-6-03	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	_	AA	GG
16._GC-01-106-6-03	CG	CT	TT	AA	_	CT	CT	AA	AA	CT	AA	CT	AA	GG
17._ICS_40	CG	CT	TT	AA	_	CT	CT	AA	AA	CT	AA	CT	AA	GG
18._ICS_40	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	_	AA	GG
19._ICS_40	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AA	CT	AA	GG
20._RUQ_1432	CG	_	_	_	GT	_	CT	_	AA	_	AA	_	_	_
21._ICS_40	GG	TT	CT	AC	GT	CC	CC	AA	GG	CC	AA	CT	AA	CG
22._GC-01-106-6-03	CC	TT	CT	AC	GG	TT	CC	AA	GG	CC	AA	CT	AT	GG
23._ICS_40	CC	TT	CT	AC	GG	TT	CC	AA	GG	CC	AA	CT	AT	GG
24._RUQ_1432	CC	AG	AA	AA	AA	_	_	AA	AA	AG	AA	AG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CC	CG	GT	AG	CT	CC	GT	CT	CC	AG	GG	CT	AG
1._ICS_40	TT	CC	CG	GT	AG	CT	CC	GT	CT	CC	AG	GG	CT	AG
2._RUQ_1432	_	CC	CG	GT	_	CT	CC	GT	CT	CC	AG	_	CT	AG
3._ICS_40	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
4._GC-01-106-6-03	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
5._GC-01-106-6-03	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
6._GC-01-106-6-03	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
7._GC-01-106-6-03	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
8._GC-01-106-6-03	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
9._ICS_40	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
10._ICS_40	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
11._ICS_40	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
12._ICS_40	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
13._RUQ_1432	TT	CC	CG	GT	AG	CT	CC	GT	CT	CC	AG	GG	CT	AG
14._GC-01-106-6-03	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
15._GC-01-106-6-03	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
16._GC-01-106-6-03	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
17._ICS_40	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
18._ICS_40	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
19._ICS_40	TT	CC	CG	GT	GG	CT	CC	GT	CT	CC	AG	GG	CT	AG
20._RUQ_1432	_	_	CG	GT	AG	_	CC	_	_	CC	_	_	_	AG
21._ICS_40	CT	CC	CG	GG	AA	CT	CC	TT	CT	AC	AA	AG	TT	AA
22._GC-01-106-6-03	CT	TT	CC	GT	AA	TT	GG	GG	CC	AA	AG	AA	CC	AG
23._ICS_40	CT	TT	CC	GT	AA	TT	GG	GG	CC	AA	AG	AA	CC	AG
24._RUQ_1432	AA	GG	CG	AC	_	AG	CC	AC	_	CC	_	GG	AG	AG

	29	30	31	32	33
_Input profile	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._ICS_40	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1432	AC	GT	AC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._ICS_40	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-106-6-03	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-106-6-03	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-106-6-03	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-106-6-03	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-106-6-03	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._ICS_40	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._ICS_40	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._ICS_40	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._ICS_40	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._RUQ_1432	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-01-106-6-03	_	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-01-106-6-03	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-01-106-6-03	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._ICS_40	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._ICS_40	AC	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._ICS_40	_	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._RUQ_1432	_	_	AC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._ICS_40	AC	GT	CC	TT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._GC-01-106-6-03	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._ICS_40	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._RUQ_1432	AC	AC	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_40

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block2

Dapeng Zhang, 2016

1._ICS_40

identical
33 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0201 2A

Dapeng Zhang, 2016

2._ICS_40 RUQ_1432

97.4 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._ICS_40

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._ICS_40 GC-01-106-6-03

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

5._ICS_40 GC-01-106-6-03

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

6._ICS_40 GC-01-106-6-03

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._ICS_40 GC-01-106-6-03

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

8._ICS_40 GC-01-106-6-03

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

9._ICS_40

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 4

Dapeng Zhang, 2016

10._ICS_40

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 6

Dapeng Zhang, 2016

11._ICS_40

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 11

Dapeng Zhang, 2016

12._ICS_40

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 13

Dapeng Zhang, 2016

13._ICS_40 RUQ_1432

97 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

14._ICS_40 GC-01-106-6-03

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 6, Rep: 3, Tree: PL6

Notes: PL6 FP4

15._ICS_40 GC-01-106-6-03

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 6, Rep: 3, Tree: PL4

Notes: PL4 FP3

16._ICS_40 GC-01-106-6-03

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

17._ICS_40

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 16

Dapeng Zhang, 2016

18._ICS_40

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 4 > FP

Dapeng Zhang, 2016

19._ICS_40

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 6 > FP

Dapeng Zhang, 2016

20._ICS_40 RUQ_1432

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

21._ICS_40

68.2 %
33 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E287 T4

Dapeng Zhang, 2016

22._ICS_40 GC-01-106-6-03

56.1 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

23._ICS_40

56.1 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 9

Dapeng Zhang, 2016

24._ICS_40 RUQ_1432

53.6 %
28 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1458	2	TcSNP1442	3	TcSNP1414	4	TcSNP1350	5	TcSNP1253
6	TcSNP1165	7	TcSNP1144	8	TcSNP1075	9	TcSNP1062	10	TcSNP1060
11	TcSNP998	12	TcSNP994	13	TcSNP953	14	TcSNP929	15	TcSNP917
16	TcSNP891	17	TcSNP872	18	TcSNP723	19	TcSNP645	20	TcSNP619
21	TcSNP577	22	TcSNP560	23	TcSNP534	24	TcSNP529	25	TcSNP469
26	TcSNP429	27	TcSNP242	28	TcSNP230	29	TcSNP193	30	TcSNP150
31	TcSNP144	32	TcSNP32	33	TcSNP25